IL_8J1Z_040

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8J1Z|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_040 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0587

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8J1Z|1|a|C|1208
8J1Z|1|a|U|1209
8J1Z|1|a|G|1210
8J1Z|1|a|C|1211
8J1Z|1|a|G|1212
8J1Z|1|a|A|1213
8J1Z|1|a|A|1214
8J1Z|1|a|G|1215
*
8J1Z|1|a|U|1234
8J1Z|1|a|G|1235
8J1Z|1|a|G|1236
8J1Z|1|a|A|1237
8J1Z|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20