IL_8J1Z_051

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8J1Z|1|a|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_051 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8J1Z|1|a|U|1468
8J1Z|1|a|A|1469
8J1Z|1|a|A|1470
8J1Z|1|a|G|1471
*
8J1Z|1|a|U|1520
8J1Z|1|a|G|1521
8J1Z|1|a|A|1522
8J1Z|1|a|U|1523
8J1Z|1|a|G|1524

Current chains

Chain a

23S rRNA

Nearby chains