IL_8J1Z_072

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACG*CCUAU

Length

8 nucleotides

Bulged bases

8J1Z|1|a|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_072 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.3741

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|A|2054
8J1Z|1|a|C|2055
8J1Z|1|a|G|2056
*
8J1Z|1|a|C|2611
8J1Z|1|a|C|2612
8J1Z|1|a|U|2613
8J1Z|1|a|A|2614
8J1Z|1|a|U|2615

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32