IL_8J1Z_080

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_080 not in the Motif Atlas

Homologous match to IL_5J7L_332

Geometric discrepancy: 0.1551

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|A|2297
8J1Z|1|a|A|2298
8J1Z|1|a|U|2299
*
8J1Z|1|a|A|2317
8J1Z|1|a|G|2318
8J1Z|1|a|G|2319
8J1Z|1|a|U|2320
8J1Z|1|a|U|2321

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L5

Chain n

50S ribosomal protein L18