IL_8J1Z_084

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_084 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.18

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8J1Z|1|a|C|2652
8J1Z|1|a|U|2653
8J1Z|1|a|A|2654
8J1Z|1|a|G|2655
8J1Z|1|a|U|2656
8J1Z|1|a|A|2657
8J1Z|1|a|C|2658
*
8J1Z|1|a|G|2663
8J1Z|1|a|G|2664
8J1Z|1|a|A|2665
8J1Z|1|a|C|2666
8J1Z|1|a|C|2667
8J1Z|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains