IL_8J1Z_100

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8J1Z_100 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8J1Z|1|a|U|1851
8J1Z|1|a|U|1852
8J1Z|1|a|A|1853
8J1Z|1|a|A|1854
8J1Z|1|a|U|1855
8J1Z|1|a|U|1856
8J1Z|1|a|G|1857
8J1Z|1|a|A|1858
8J1Z|1|a|U|1859
8J1Z|1|a|G|1860
*
8J1Z|1|a|U|1882
8J1Z|1|a|U|1883
8J1Z|1|a|G|1884
8J1Z|1|a|A|1885
8J1Z|1|a|U|1886
8J1Z|1|a|C|1887
8J1Z|1|a|G|1888
8J1Z|1|a|A|1889
8J1Z|1|a|A|1890
8J1Z|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains