IL_8JDJ_026

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8JDJ|1|D|U|467, 8JDJ|1|D|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|A|466
8JDJ|1|D|U|467
8JDJ|1|D|U|468
8JDJ|1|D|C|469
8JDJ|1|D|A|470
8JDJ|1|D|A|471
8JDJ|1|D|C|472
*
8JDJ|1|D|G|682
8JDJ|1|D|C|683
8JDJ|1|D|G|684
8JDJ|1|D|C|685
8JDJ|1|D|A|686
8JDJ|1|D|U|687
8JDJ|1|D|U|688
8JDJ|1|D|U|689

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain v

60S ribosomal protein L28