IL_8JDJ_043

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8JDJ|1|D|A|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_043 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.1968

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8JDJ|1|D|G|1073
8JDJ|1|D|G|1074
*
8JDJ|1|D|C|1237
8JDJ|1|D|A|1238
8JDJ|1|D|C|1239

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29