IL_8JDJ_045

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8JDJ|1|D|C|1214, 8JDJ|1|D|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_045 not in the Motif Atlas

Geometric match to IL_4KQ0_001

Geometric discrepancy: 0.2923

The information below is about IL_4KQ0_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8JDJ|1|D|C|1082
8JDJ|1|D|U|1083
8JDJ|1|D|C|1084
*
8JDJ|1|D|G|1213
8JDJ|1|D|C|1214
8JDJ|1|D|C|1215
8JDJ|1|D|C|1216
8JDJ|1|D|G|1217

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L7

Chain g

60S ribosomal protein L29