IL_8JDJ_076
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AC(PSU)U*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_076 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.3153
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8JDJ|1|D|A|1858
8JDJ|1|D|C|1859
8JDJ|1|D|PSU|1860
8JDJ|1|D|U|1861
*
8JDJ|1|D|A|1873
8JDJ|1|D|A|1874
8JDJ|1|D|C|1875
8JDJ|1|D|U|1876
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 60S ribosomal protein L7
- Chain O
- 60S ribosomal protein L10-like
- Chain g
- 60S ribosomal protein L29
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