IL_8JDJ_083
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8JDJ|1|D|C|1935, 8JDJ|1|D|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_083 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.141
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|D|G|1933
8JDJ|1|D|A|1934
8JDJ|1|D|C|1935
8JDJ|1|D|C|1936
8JDJ|1|D|C|1937
8JDJ|1|D|C|1938
8JDJ|1|D|A|1939
8JDJ|1|D|G|1940
8JDJ|1|D|A|1941
8JDJ|1|D|A|1942
8JDJ|1|D|A|1943
8JDJ|1|D|A|1944
*
8JDJ|1|D|U|2038
8JDJ|1|D|G|2039
8JDJ|1|D|A|2040
8JDJ|1|D|A|2041
8JDJ|1|D|A|2042
8JDJ|1|D|A|2043
8JDJ|1|D|U|2044
8JDJ|1|D|G|2045
8JDJ|1|D|G|2046
8JDJ|1|D|A|2047
8JDJ|1|D|U|2048
8JDJ|1|D|G|2049
8JDJ|1|D|G|2050
8JDJ|1|D|C|2051
8JDJ|1|D|G|2052
8JDJ|1|D|C|2053
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L10-like
- Chain T
- 60S ribosomal protein L13a
- Chain k
- 60S ribosomal protein L35a
- Chain r
- Ubiquitin-60S ribosomal protein L40
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