IL_8JDJ_109

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8JDJ|1|D|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_109 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0713

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8JDJ|1|D|C|2867
8JDJ|1|D|G|2868
8JDJ|1|D|U|2869
8JDJ|1|D|A|2870
8JDJ|1|D|A|2871
8JDJ|1|D|C|2872
*
8JDJ|1|D|G|2877
8JDJ|1|D|G|2878
8JDJ|1|D|A|2879
8JDJ|1|D|U|2880
8JDJ|1|D|A|2881
8JDJ|1|D|A|2882
8JDJ|1|D|G|2883

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain s

60S ribosomal protein L41

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA