IL_8JDJ_140
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GACC*GC
- Length
- 6 nucleotides
- Bulged bases
- 8JDJ|1|D|C|4349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_140 not in the Motif Atlas
- Geometric match to IL_5J7L_269
- Geometric discrepancy: 0.3328
- The information below is about IL_5J7L_269
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_26793.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
8JDJ|1|D|G|4347
8JDJ|1|D|A|4348
8JDJ|1|D|C|4349
8JDJ|1|D|C|4350
*
8JDJ|1|D|G|4364
8JDJ|1|D|C|4365
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L13
- Chain V
- 60S ribosomal protein L18
- Chain f
- 60S ribosomal protein L27a
- Chain t
- 60S ribosomal protein L36a
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