IL_8JDJ_144

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_144 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.146

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8JDJ|1|D|C|4412
8JDJ|1|D|C|4413
8JDJ|1|D|A|4414
8JDJ|1|D|A|4415
8JDJ|1|D|G|4416
*
8JDJ|1|D|C|4426
8JDJ|1|D|G|4427
8JDJ|1|D|A|4428
8JDJ|1|D|C|4429
8JDJ|1|D|G|4430

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain O

60S ribosomal protein L10-like

Chain r

Ubiquitin-60S ribosomal protein L40