IL_8JDJ_187
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8JDJ|1|E|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_187 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.0906
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8JDJ|1|E|G|82
8JDJ|1|E|A|83
8JDJ|1|E|U|84
8JDJ|1|E|G|85
*
8JDJ|1|E|C|92
8JDJ|1|E|G|93
8JDJ|1|E|C|94
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 60S ribosomal protein L7
- Chain O
- 60S ribosomal protein L10-like
- Chain X
- 60S ribosomal protein L18a
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