IL_8JDJ_215

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_215 not in the Motif Atlas

Homologous match to IL_8C3A_419

Geometric discrepancy: 0.5613

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8JDJ|1|w|C|532
8JDJ|1|w|A|533
8JDJ|1|w|G|534
*
8JDJ|1|w|C|549
8JDJ|1|w|C|550
8JDJ|1|w|U|551
8JDJ|1|w|G|552

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S9

Chain AQ

40S ribosomal protein S30