IL_8JDJ_232

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8JDJ|1|w|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_232 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.257

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8JDJ|1|w|G|925
8JDJ|1|w|A|926
8JDJ|1|w|C|927
*
8JDJ|1|w|G|1014
8JDJ|1|w|U|1015
8JDJ|1|w|U|1016
8JDJ|1|w|U|1017

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 9

40S ribosomal protein S13

Chain AN

40S ribosomal protein S27