IL_8JDJ_236
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 8JDJ|1|w|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_236 not in the Motif Atlas
- Geometric match to IL_4V88_434
- Geometric discrepancy: 0.1281
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8JDJ|1|w|G|952
8JDJ|1|w|C|953
8JDJ|1|w|U|954
8JDJ|1|w|A|955
8JDJ|1|w|G|956
*
8JDJ|1|w|C|967
8JDJ|1|w|U|968
8JDJ|1|w|U|969
8JDJ|1|w|G|970
8JDJ|1|w|G|971
8JDJ|1|w|A|972
8JDJ|1|w|C|973
8JDJ|1|w|C|974
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S14
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain y
- 40S ribosomal protein S3a
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