IL_8JDJ_243
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_243 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1755
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8JDJ|1|w|G|1168
8JDJ|1|w|G|1169
8JDJ|1|w|A|1170
8JDJ|1|w|G|1171
8JDJ|1|w|U|1172
8JDJ|1|w|A|1173
8JDJ|1|w|PSU|1174
8JDJ|1|w|G|1175
*
8JDJ|1|w|U|1186
8JDJ|1|w|G|1187
8JDJ|1|w|A|1188
8JDJ|1|w|A|1189
8JDJ|1|w|A|1190
8JDJ|1|w|C|1191
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AJ
- 40S ribosomal protein S23
- Chain s
- 60S ribosomal protein L41
Coloring options: