IL_8JDJ_249

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC(PSU)G*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_249 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2991

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8JDJ|1|w|C|1230
8JDJ|1|w|C|1231
8JDJ|1|w|PSU|1232
8JDJ|1|w|G|1233
*
8JDJ|1|w|C|1525
8JDJ|1|w|G|1526
8JDJ|1|w|C|1527
8JDJ|1|w|G|1528

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15

Chain AC

40S ribosomal protein S16

Chain AE

40S ribosomal protein S18

Chain AF

40S ribosomal protein S19

Chain AL

40S ribosomal protein S25

Chain B

Transfer RNA; tRNA