IL_8JDJ_251

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_251 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.122

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDJ|1|w|G|1270
8JDJ|1|w|C|1271
8JDJ|1|w|C|1272
*
8JDJ|1|w|G|1510
8JDJ|1|w|U|1511
8JDJ|1|w|C|1512

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10

Chain AP

40S ribosomal protein S29