IL_8JDJ_263

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

8JDJ|1|w|C|1403, 8JDJ|1|w|U|1404

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_263 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1163

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8JDJ|1|w|A|1402
8JDJ|1|w|C|1403
8JDJ|1|w|U|1404
8JDJ|1|w|A|1405
*
8JDJ|1|w|U|1441
8JDJ|1|w|OMU|1442
8JDJ|1|w|C|1443
8JDJ|1|w|U|1444

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S16

Chain AG

40S ribosomal protein S20