IL_8JDJ_279
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_279 not in the Motif Atlas
- Homologous match to IL_8C3A_480
- Geometric discrepancy: 0.1423
- The information below is about IL_8C3A_480
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8JDJ|1|w|C|1742
8JDJ|1|w|G|1743
8JDJ|1|w|G|1744
8JDJ|1|w|A|1745
8JDJ|1|w|U|1746
*
8JDJ|1|w|A|1788
8JDJ|1|w|G|1789
8JDJ|1|w|A|1790
8JDJ|1|w|A|1791
8JDJ|1|w|G|1792
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S6
- Chain 5
- 40S ribosomal protein S8
- Chain b
- 60S ribosomal protein L24
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