IL_8JDJ_288
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCGAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8JDJ|1|D|G|1741
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_288 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.2126
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8JDJ|1|D|G|1739
8JDJ|1|D|C|1740
8JDJ|1|D|G|1741
8JDJ|1|D|A|1742
8JDJ|1|D|A|1743
8JDJ|1|D|PSU|1744
*
8JDJ|1|D|A|1786
8JDJ|1|D|A|1787
8JDJ|1|D|A|1788
8JDJ|1|D|C|1789
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 60S ribosomal protein L5
- Chain O
- 60S ribosomal protein L10-like
- Chain Y
- 60S ribosomal protein L21
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