IL_8JDJ_298

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_298 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0595

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8JDJ|1|D|G|2847
8JDJ|1|D|G|2848
8JDJ|1|D|A|2849
8JDJ|1|D|A|2850
8JDJ|1|D|G|2851
8JDJ|1|D|U|2852
8JDJ|1|D|C|2853
8JDJ|1|D|G|2854
8JDJ|1|D|G|2855
*
8JDJ|1|D|C|3837
8JDJ|1|D|U|3838
8JDJ|1|D|G|3839
8JDJ|1|D|U|3840
8JDJ|1|D|OMC|3841

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23