IL_8JDJ_307
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_307 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.0622
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8JDJ|1|D|C|4466
8JDJ|1|D|A|4467
8JDJ|1|D|U|4468
8JDJ|1|D|U|4469
8JDJ|1|D|G|4470
*
8JDJ|1|D|C|4485
8JDJ|1|D|C|4486
8JDJ|1|D|A|4487
8JDJ|1|D|A|4488
8JDJ|1|D|G|4489
8JDJ|1|D|C|4490
8JDJ|1|D|G|4491
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L3
- Chain N
- 60S ribosomal protein L9
- Chain a
- 60S ribosomal protein L23
- Chain r
- Ubiquitin-60S ribosomal protein L40
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