IL_8JDJ_307

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|4466
8JDJ|1|D|A|4467
8JDJ|1|D|U|4468
8JDJ|1|D|U|4469
8JDJ|1|D|G|4470
*
8JDJ|1|D|C|4485
8JDJ|1|D|C|4486
8JDJ|1|D|A|4487
8JDJ|1|D|A|4488
8JDJ|1|D|G|4489
8JDJ|1|D|C|4490
8JDJ|1|D|G|4491

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain N

60S ribosomal protein L9

Chain a

60S ribosomal protein L23

Chain r

Ubiquitin-60S ribosomal protein L40