IL_8JDJ_319
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AC*GAA(PSU)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDJ_319 not in the Motif Atlas
- Homologous match to IL_8P9A_412
- Geometric discrepancy: 0.3941
- The information below is about IL_8P9A_412
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.2
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 23
Unit IDs
8JDJ|1|w|A|802
8JDJ|1|w|C|803
*
8JDJ|1|w|G|860
8JDJ|1|w|A|861
8JDJ|1|w|A|862
8JDJ|1|w|PSU|863
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S7
- Chain 8
- 40S ribosomal protein S11
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
Coloring options: