IL_8JDJ_324

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACAG*CUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDJ_324 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3784

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8JDJ|1|w|G|1290
8JDJ|1|w|A|1291
8JDJ|1|w|C|1292
8JDJ|1|w|A|1293
8JDJ|1|w|G|1294
*
8JDJ|1|w|C|1305
8JDJ|1|w|U|1306
8JDJ|1|w|U|1307
8JDJ|1|w|U|1308
8JDJ|1|w|C|1309

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 7

40S ribosomal protein S10

Chain AB

40S ribosomal protein S15