IL_8JDK_003

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8JDK|1|F|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_003 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.5682

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8JDK|1|D|C|6
8JDK|1|D|C|7
*
8JDK|1|F|G|149
8JDK|1|F|C|150
8JDK|1|F|G|151

Current chains

Chain D

28S ribosomal RNA

Chain F

5.8S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L7a

Chain S

60S ribosomal protein L15

Chain c

60S ribosomal protein L23a