IL_8JDK_017
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8JDK|1|D|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_017 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2509
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8JDK|1|D|C|339
8JDK|1|D|C|340
8JDK|1|D|G|341
8JDK|1|D|G|342
*
8JDK|1|F|C|32
8JDK|1|F|G|33
Current chains
- Chain D
- 28S ribosomal RNA
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain o
- 60S ribosomal protein L37
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