IL_8JDK_093
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8JDK|1|D|A|2512, 8JDK|1|D|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_093 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0835
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8JDK|1|D|C|2446
8JDK|1|D|U|2447
8JDK|1|D|G|2448
8JDK|1|D|A|2449
8JDK|1|D|G|2450
*
8JDK|1|D|C|2509
8JDK|1|D|G|2510
8JDK|1|D|A|2511
8JDK|1|D|A|2512
8JDK|1|D|A|2513
8JDK|1|D|G|2514
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain F
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8
- Chain l
- 60S ribosomal protein L34
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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