IL_8JDK_111

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

G(OMG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_111 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.0858

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8JDK|1|D|G|3626
8JDK|1|D|OMG|3627
8JDK|1|D|G|3628
*
8JDK|1|D|C|3833
8JDK|1|D|C|3834
8JDK|1|D|C|3835

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L23

Chain w

Small subunit ribosomal RNA; SSU rRNA