IL_8JDK_114

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8JDK|1|D|A|3663, 8JDK|1|D|U|3679, 8JDK|1|D|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_114 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.058

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8JDK|1|D|C|3660
8JDK|1|D|G|3661
8JDK|1|D|A|3662
8JDK|1|D|A|3663
8JDK|1|D|G|3664
8JDK|1|D|G|3665
*
8JDK|1|D|U|3677
8JDK|1|D|G|3678
8JDK|1|D|U|3679
8JDK|1|D|U|3680
8JDK|1|D|G|3681
8JDK|1|D|A|3682
8JDK|1|D|C|3683
8JDK|1|D|G|3684

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain u

60S ribosomal protein L37a

Chain w

Small subunit ribosomal RNA; SSU rRNA