IL_8JDK_141

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8JDK|1|D|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_141 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0701

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8JDK|1|D|G|4405
8JDK|1|D|U|4406
8JDK|1|D|G|4407
*
8JDK|1|D|U|4435
8JDK|1|D|U|4436
8JDK|1|D|U|4437
8JDK|1|D|U|4438
8JDK|1|D|U|4439

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain H

60S ribosomal protein L3

Chain O

60S ribosomal protein L10-like