IL_8JDK_164

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8JDK|1|D|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_164 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2308

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8JDK|1|D|G|4680
8JDK|1|D|A|4681
8JDK|1|D|U|4682
8JDK|1|D|U|4683
8JDK|1|D|A|4684
8JDK|1|D|U|4685
*
8JDK|1|D|A|4705
8JDK|1|D|G|4706
8JDK|1|D|A|4707
8JDK|1|D|A|4708
8JDK|1|D|U|4709
8JDK|1|D|C|4710

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain T

60S ribosomal protein L13a

Chain r

Ubiquitin-60S ribosomal protein L40