IL_8JDK_169

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_169 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1298

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDK|1|D|G|4769
8JDK|1|D|U|4770
8JDK|1|D|C|4771
*
8JDK|1|D|G|4863
8JDK|1|D|U|4864
8JDK|1|D|C|4865

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L9

Chain T

60S ribosomal protein L13a