IL_8JDK_170

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_170 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3185

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8JDK|1|D|U|4885
8JDK|1|D|C|4886
8JDK|1|D|C|4887
8JDK|1|D|U|4888
8JDK|1|D|G|4889
*
8JDK|1|D|C|4930
8JDK|1|D|G|4931
8JDK|1|D|U|4932
8JDK|1|D|C|4933
8JDK|1|D|A|4934

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain R

60S ribosomal protein L14

Chain T

60S ribosomal protein L13a