IL_8JDK_195

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

G(PSU)UAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_195 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3743

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8JDK|1|w|G|108
8JDK|1|w|PSU|109
8JDK|1|w|U|110
8JDK|1|w|A|111
8JDK|1|w|U|112
*
8JDK|1|w|A|349
8JDK|1|w|C|350
8JDK|1|w|G|351
8JDK|1|w|U|352
8JDK|1|w|C|353

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein S4, X isoform

Chain 5

40S ribosomal protein S8

Chain 8

40S ribosomal protein S11