IL_8JDK_221
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GUU(A2M)AAA*UC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_221 not in the Motif Atlas
- Geometric match to IL_4LFB_022
- Geometric discrepancy: 0.1433
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8JDK|1|w|G|665
8JDK|1|w|U|666
8JDK|1|w|U|667
8JDK|1|w|A2M|668
8JDK|1|w|A|669
8JDK|1|w|A|670
8JDK|1|w|A|671
*
8JDK|1|w|U|1161
8JDK|1|w|C|1162
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AJ
- 40S ribosomal protein S23
- Chain AM
- 40S ribosomal protein S26
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