IL_8JDK_224

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

G(PSU)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_224 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2045

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8JDK|1|w|G|680
8JDK|1|w|PSU|681
8JDK|1|w|U|682
*
8JDK|1|w|A|1023
8JDK|1|w|A|1024
8JDK|1|w|U|1025

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 8

40S ribosomal protein S11

Chain 9

40S ribosomal protein S13

Chain AI

40S ribosomal protein S15a

Chain AJ

40S ribosomal protein S23