IL_8JDK_238
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_238 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1215
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8JDK|1|w|C|1098
8JDK|1|w|G|1099
8JDK|1|w|A|1100
8JDK|1|w|U|1101
*
8JDK|1|w|G|1131
8JDK|1|w|C|1132
8JDK|1|w|A|1133
8JDK|1|w|G|1134
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 9
- 40S ribosomal protein S13
- Chain AD
- 40S ribosomal protein S17
- Chain AM
- 40S ribosomal protein S26
- Chain x
- 40S ribosomal protein SA
- Chain y
- 40S ribosomal protein S3a
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