IL_8JDK_239
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_239 not in the Motif Atlas
- Geometric match to IL_1MFQ_003
- Geometric discrepancy: 0.2168
- The information below is about IL_1MFQ_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8JDK|1|w|U|1101
8JDK|1|w|G|1102
8JDK|1|w|C|1103
*
8JDK|1|w|G|1129
8JDK|1|w|G|1130
8JDK|1|w|G|1131
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 9
- 40S ribosomal protein S13
- Chain AD
- 40S ribosomal protein S17
- Chain AM
- 40S ribosomal protein S26
- Chain AN
- 40S ribosomal protein S27
- Chain y
- 40S ribosomal protein S3a
Coloring options: