IL_8JDK_253
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- G(OMG)UGCAU*AUGCC
- Length
- 12 nucleotides
- Bulged bases
- 8JDK|1|w|C|1331
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_253 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3328
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8JDK|1|w|G|1327
8JDK|1|w|OMG|1328
8JDK|1|w|U|1329
8JDK|1|w|G|1330
8JDK|1|w|C|1331
8JDK|1|w|A|1332
8JDK|1|w|U|1333
*
8JDK|1|w|A|1498
8JDK|1|w|U|1499
8JDK|1|w|G|1500
8JDK|1|w|C|1501
8JDK|1|w|C|1502
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 7
- 40S ribosomal protein S10
- Chain A
- mRNA
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain C
- Transfer RNA; tRNA
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