IL_8JDK_259

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_259 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3764

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDK|1|w|U|1400
8JDK|1|w|A|1401
8JDK|1|w|A|1402
*
8JDK|1|w|U|1444
8JDK|1|w|PSU|1445
8JDK|1|w|A|1446

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AC

40S ribosomal protein S16

Chain AG

40S ribosomal protein S20

Chain AR

Receptor of activated protein C kinase 1