IL_8JDK_280

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

C(4AC)G*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_280 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.115

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDK|1|w|C|1841
8JDK|1|w|4AC|1842
8JDK|1|w|G|1843
*
8JDK|1|w|C|1856
8JDK|1|w|G|1857
8JDK|1|w|G|1858

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S14

Chain AM

40S ribosomal protein S26

Chain s

60S ribosomal protein L41