IL_8JDK_284
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8JDK|1|D|A|1650, 8JDK|1|D|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDK_284 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0665
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8JDK|1|D|OMG|1522
8JDK|1|D|A|1523
8JDK|1|D|A2M|1524
8JDK|1|D|A|1525
8JDK|1|D|G|1526
*
8JDK|1|D|C|1648
8JDK|1|D|U|1649
8JDK|1|D|A|1650
8JDK|1|D|G|1651
8JDK|1|D|U|1652
8JDK|1|D|A|1653
8JDK|1|D|G|1654
8JDK|1|D|C|1655
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L37
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