IL_8JDK_298

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_298 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.3201

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8JDK|1|D|PSU|3715
8JDK|1|D|C|3716
8JDK|1|D|A|3717
8JDK|1|D|A2M|3718
8JDK|1|D|A|3719
8JDK|1|D|G|3720
8JDK|1|D|U|3721
*
8JDK|1|D|A|3732
8JDK|1|D|A|3733
8JDK|1|D|PSU|3734
8JDK|1|D|G|3735
8JDK|1|D|A|3736
8JDK|1|D|A|3737
8JDK|1|D|G|3738

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8

Chain n

60S ribosomal protein L36