IL_8JDK_302

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GG*(PSU)CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDK_302 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.3823

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8JDK|1|D|G|4400
8JDK|1|D|G|4401
*
8JDK|1|D|PSU|4442
8JDK|1|D|C|4443
8JDK|1|D|C|4444

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain O

60S ribosomal protein L10-like

Chain g

60S ribosomal protein L29