IL_8JDL_025

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8JDL|1|D|U|467, 8JDL|1|D|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|A|466
8JDL|1|D|U|467
8JDL|1|D|U|468
8JDL|1|D|C|469
8JDL|1|D|A|470
8JDL|1|D|A|471
8JDL|1|D|C|472
*
8JDL|1|D|G|682
8JDL|1|D|C|683
8JDL|1|D|G|684
8JDL|1|D|C|685
8JDL|1|D|A|686
8JDL|1|D|U|687
8JDL|1|D|U|688
8JDL|1|D|U|689

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain v

60S ribosomal protein L28