IL_8JDL_027

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

8JDL|1|D|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDL_027 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.181

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDL|1|D|G|487
8JDL|1|D|G|488
8JDL|1|D|C|489
*
8JDL|1|D|G|666
8JDL|1|D|A|667
8JDL|1|D|C|668
8JDL|1|D|C|669

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain v

60S ribosomal protein L28